1
About
2
Getting started
2.1
Connecting to the VPN
2.2
Topology of the lab servers
2.3
Best practices
2.4
Connecting to RStudio
2.5
Connecting to the command line of a server
3
Server information
3.1
Server attributes
3.2
Server resource monitor
3.2.1
Load average
3.2.2
Memory utilization
3.3
How to pick a server to work on
3.4
More precise monitoring
4
Troubleshooting
4.1
Troubleshooting file permissions errors
4.2
Troubleshooting the RStudio Server login
5
Transferring files
5.1
Simple transfers:
scp
5.1.1
Transferring files
5.1.2
Transferring folders
5.1.3
Other
scp
options
5.2
Large transfers:
rsync
5.2.1
Other rsync options
5.3
Interacting with the cloud:
rclone
6
Special instructions for specific software
6.1
Gurobi
6.1.1
Use
6.1.2
Installation
6.1.2.1
Download Gurobi and upload to the server
6.1.2.2
Decompress to
/opt/
6.1.2.3
Enable for command-line users
6.1.2.4
Enable for RStudio Server users
6.1.2.5
Install the R package
6.2
fbkmr
6.2.1
Installing dependencies
6.2.2
Installing
fbkmr
6.3
RQPD
6.3.1
Clone the RQPD Subversion repository
6.3.2
Install
7
Datasets: Exposures
8
Datasets: Outcomes
9
Datasets: Covariates
Joel’s lab guide
9
Datasets: Covariates