1
About
2
Getting started
2.1
Connecting to the VPN
2.2
Topology of the lab servers
2.3
Best practices
2.4
Connecting to RStudio
2.5
Connecting to the command line of a server
2.6
Troubleshooting the RStudio Server login
3
Server information
3.1
Server attributes
3.2
Server resource monitor
3.2.1
Load average
3.2.2
Memory utilization
3.3
How to pick a server to work on
3.4
More precise monitoring
4
Transferring files
4.1
Simple transfers:
scp
4.1.1
Transferring files
4.1.2
Transferring folders
4.1.3
Other
scp
options
4.2
Large transfers:
rsync
4.2.1
Other rsync options
4.3
Interacting with the cloud:
rclone
5
Special instructions for specific software
5.1
Gurobi
5.1.1
Use
5.1.2
Installation
5.1.2.1
Download Gurobi and upload to the server
5.1.2.2
Decompress to
/opt/
5.1.2.3
Enable for command-line users
5.1.2.4
Enable for RStudio Server users
5.1.2.5
Install the R package
5.2
fbkmr
5.2.1
Installing dependencies
5.2.2
Installing
fbkmr
5.3
RQPD
5.3.1
Clone the RQPD Subversion repository
5.3.2
Install
6
Datasets: Exposures
7
Datasets: Outcomes
8
Datasets: Covariates
Joel’s lab guide
8
Datasets: Covariates